Exiting because of *output file* error
</requirequalifiedaccess>WebMar 9, 2024 · it's trying to write ~1.2GB file, not sure why it's failing. Please use --runThreadN 2 at least, it will be much faster if you set to the number of cores on you machine (thought >20 does not usually increase speed). Also, use Gencode GTF file, not GFF3. Cheers Alex
Exiting because of *output file* error
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WebFeb 14, 2024 · Hi, I tried to generate genomic indices using the latest STAR version and using the latest fasta file Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa, and it created these files - chrLength.txt chrNameLength.txt chrName.txt chrStart.txt e...WebOct 15, 2024 · SOLUTION: check that the path exists and you have write permission for this file. Also check ulimit -n and increase it to allow more open files. however, ulimit is already set as unlimited.
WebApr 18, 2024 · 2024-04-18 20:45 - ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file /home/simonova/fusion_genes_kate_STAR-SEQR/fusion_genes_kate._STARtmp//BAMsort/20/16\nSOLUTION: check that the path …WebOct 30, 2024 · To resolve the sorting problem: check the disk space, is there enough for STAR to write temporary files? If this is not the problem, please send me the output of $ ls -lR _STARtmp in the failed directory run. Cheers Alex
WebJul 1, 2024 · SOLUTION: check that the path exists and you have write permission for this file. Also check ulimit -n and increase it to allow more open files. Jul 02 11:18:21 ..... FATAL ERROR, exiting You can see more details from the attached file. 2312229_err.txt 2312229.out.txt Log.out.txt Web2 hours ago · I am trying to read the list of branches from a Git repo from .NET. This script works: open System.Diagnostics [ <requirequalifiedaccess>
Webtry this on the command line before you run it. mkdir /home/theory/Desktop/star/genome/
WebSep 13, 2016 · Hi, I am running into an issue which might be easily solved, but not by myself. I'm on a cluster which has STAR_2.5.2a_modified I run an instance of STAR with the genomeGenerate option, using the f...hb-incWebApr 7, 2024 · Hi @ishikorotaroJ. when you are requesting BAM sorting and a large number of threads, you need to increase the "maximum number of open files" with ulimit -n 4000.This often requires sudo privileges, if you do not have them, you will need to ask the sys-admin to increase that number globally.gold and wassall ltdWebAug 16, 2013 · You'll need to grant IIS_IUSRS read and modify access over the temp folder of the user the app pool is running as. This could either be the temp folder in the app pool user's profile, e.g. c:\Windows\ServiceProfiles\NetworkService\AppData\Local\Temp, or the system temp folder at c:\windows\temp. Share Improve this answer Followgold and warWebNov 29, 2024 · _BAMoutput.cpp:27:BAMoutput: exiting because of OUTPUT FILE error: could not create output file SampleName-STARtmp//BAMsort/19/26 SOLUTION: check that the path exists and …gold and wassall hingesWebOct 9, 2024 · EXITING because of fatal input ERROR: could not open readFilesIn=/dfs1/bio/dtatarak/DT-advancement_RNAseq_stuff/RNAseq_10_4_2024/DT_1_read1.fastq Does anyone have experience using STAR? I cannot figure out why it isn't able to open my read files. bash …gold and wassall hinges ltd] module Async = let parallel2 a b = async { ...hb inconsistency\u0027shb inconsistency\\u0027s